Artificial intelligence with deep learning algorithms to model relationships between total tree height and diameter at breast height

Abstract

Aim of Study: As an innovative prediction technique, Artificial Intelligence technique based on a Deep Learning Algorithm (DLA) with various numbers of neurons and hidden layer alternatives were trained and evaluated to predict the relationships between total tree height (TTH) and diameter at breast height (DBH) with nonlinear least squared (NLS) regression models and nonlinear mixed effect (NLME) regression models.

Area of Study: The data of this study were measured from even-aged, pure Turkish Pine (Pinus brutia Ten.) stands in the Kestel Forests located in the Bursa region of northwestern Turkey.

Material and Methods: 1132 pairs of TTH-DBH measurements from 132 sample plots were used for modeling relationships between TTH, DBH, and stand attributes such as dominant height (Ho) and diameter (Do).

Main Results: The combination of 100 # neurons and 8 # hidden layer in DLA resulted in the best predictive total height prediction values with Average Absolute Error (0.4188), max. Average Absolute Error (3.7598), Root Mean Squared Error (0.6942), Root Mean Squared error % (5.2164), Akaike Information Criteria (-345.4465), Bayesian Information Criterion (-330.836), the average Bias (0.0288) and the average Bias % (0.2166), and fitting abilities with r (0.9842) and Fit Index (0.9684). Also, the results of equivalence tests showed that the DLA technique successfully predicted the TTH in the validation dataset.

Research highlights: These superior fitting scores coupled with the validation results in TTH predictions suggested that deep learning network models should be considered an alternative to the traditional nonlinear regression techniques and should be given importance as an innovative prediction technique.

Keywords: Prediction; artificial intelligence; deep learning algorithms; number of neurons; hidden layer alternatives.

Abbreviations: TTH (total tree height), DBH (diameter at breast height), OLS (ordinary least squares), NLME (nonlinear mixed effect), AIT (Artificial Intelligence Techniques), ANN (Artificial Neural Network), DLA (Deep Learning Algorithm), GPU (Graphical Processing Units), NLS (nonlinear least squared), RMSE (root mean squared error), AIC (Akaike information criteria), BIC (Bayesian information criterion), FI (fit index), AAE (average absolute error), BLUP (best linear unbiased predictor), TOST (two one-sided test method).

 

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Author Biography

İlker Ercanli, Cankırı Karatekin Univeristy, Forest Faculty, Çankırı.
Forest growth and Yiled Studies

References

Ashraf MI, Zhao Z, Bourque CP-A, MacLean DA, Meng F-R, 2013. Integrating biophysical controls in forest growth and yield predictions with artificial intelligence technology. Can J For Res 43: 1162-1171. https://doi.org/10.1139/cjfr-2013-0090

Bredenkamp BV, Gregoire TG, 1988. A forestry application of Schnute's generalized growth function. For Sci 34: 790-797.

Bronisz K, Mehtätalo L, 2020. Mixed-effects generalized height-diameter model for young silver birch stands on post-agricultural lands. Forest Ecol Manag 460: 117901. https://doi.org/10.1016/j.foreco.2020.117901

Calama R, Montero G, 2004. Interregional nonlinear height diameter model with random coefficients for stone pine in Spain. Can J For Res 34: 150-163. https://doi.org/10.1139/x03-199

Carranza-Rojas J, Goeau H, Bonnet P, Mata-Montero E, Joly A, 2017. Going deeper in the automated identification of Herbarium specimens. Bmc Evol Biol 17: 181. https://doi.org/10.1186/s12862-017-1014-z

Castedo-Dorado F, Anta MB, Parresol BR, González JGÁ, 2005. A stochastic height-diameter model for maritime pine ecoregions in Galicia (northwestern Spain). Ann For Sci 62: 455-465. https://doi.org/10.1051/forest:2005042

Castedo-Dorado F, Diéguez-Aranda U, Anta MB, Rodríguez MS, von Gadow K, 2006. A generalized height-diameter model including random components for radiata pine plantations in northwestern Spain. Forest Ecol Manag 229: 202-213. https://doi.org/10.1016/j.foreco.2006.04.028

Clutter JL, Fortson JC, Pienaar LV, Brister GH, Bailey RL, 1983. Timber management: a quantitative approach. John Wiley & Sons, Inc.

Crecente-Campo F, Tome M, Soares P, Dieguez-Aranda U, 2010. A generalized nonlinear mixed-effects height-diameter model for Eucalyptus globulus L. in northwestern Spain. Forest Ecol Manag 259: 943-952. https://doi.org/10.1016/j.foreco.2009.11.036

Crookston NL, Dixon GE, 2005. The forest vegetation simulator: A review of its structure, content, and applications. Comput Electron Agr 49: 60-80. https://doi.org/10.1016/j.compag.2005.02.003

Curtis RO, 1967. Height-diameter and height-diameter-age equations for second-growth Douglas-fir. For Sci 13: 365-375.

Diamantopoulou M, Milios E, 2010. Modelling total volume of dominant pine trees in reforestations via multivariate analysis and artificial neural network models. Biosyst Eng 105: 306-315. https://doi.org/10.1016/j.biosystemseng.2009.11.010

Diamantopoulou MJ, 2005a. Artificial neural networks as an alternative tool in pine bark volume estimation. Comput Electron Agr 48: 235-244. https://doi.org/10.1016/j.compag.2005.04.002

Diamantopoulou MJ, 2005b. Predicting fir trees stem diameters using artificial neural network models. South Afr For J 205: 39-44. https://doi.org/10.2989/10295920509505236

Diamantopoulou MJ, 2006. Tree-bole volume estimation on standing pine trees using cascade correlation artificial neural network models. Agr Eng Int Vol. VIII. June: 1-14.

Diamantopoulou MJ, Özçelik R, 2012. Evaluation of different modeling approaches for total tree-height estimation in Mediterranean Region of Turkey. Forest Syst 21: 383-397. https://doi.org/10.5424/fs/2012213-02338

Diamantopoulou MJ, Özçelik R, Crecente-Campo F, Eler Ü, 2015. Estimation of Weibull function parameters for modelling tree diameter distribution using least squares and artificial neural networks methods. Biosyst Eng 133: 33-45. https://doi.org/10.1016/j.biosystemseng.2015.02.013

Ercanlı İ, 2020. Innovative deep learning artificial intelligence applications for predicting relationships between individual tree height and diameter at breast height. For Ecosyst 7: 1-18. https://doi.org/10.1186/s40663-020-00226-3

Ercanlı İ, Bolat F, Yavuz H, 2018. Ormanların Çap Dağılımlarının Modellenmesinde Derin Öğrenme Algoritmalarının Kullanımı: Trabzon ve Giresun Ormanları Doğu Ladini-Sarıçam Karışık Meşcereleri Örneği. Anadolu Orman Araştırmaları Dergisi 4: 122-132.

Ferentinos KP, 2018. Deep learning models for plant disease detection and diagnosis. Comput Electron Agr 145: 311-318. https://doi.org/10.1016/j.compag.2018.01.009

Fulton MR, 1999. Patterns in height-diameter relationships for selected tree species and sites in eastern Texas. Can J For Res 29: 1445-1448. https://doi.org/10.1139/x99-103

Grégoire TG, Schabenberger O, Barrett JP, 1995. Linear modelling of irregularly spaced, unbalanced, longitudinal data from permanent-plot measurements. Can J For Res 25: 137-156. https://doi.org/10.1139/x95-017

Gregorie TG, 1987. Generalized error structure for forestry yield models. For Sci 33: 423-444.

Hasenauer H, Merkl D, Weingartner M, 2001. Estimating tree mortality of Norway spruce stands with neural networks. Adv Environ Res 5: 405-414. https://doi.org/10.1016/S1093-0191(01)00092-2

Huang S, Meng SX, Yang Y, 2009. Using nonlinear mixed model technique to determine the optimal tree height prediction model for black spruce. Mod Appl Sci 3: 3-18. https://doi.org/10.5539/mas.v3n4p3

Huang S, Price D, Titus S, 2000. Development of ecoregion-based height-diameter models for white spruce in boreal forests. Forest Ecol Manag 129: 125-141. https://doi.org/10.1016/S0378-1127(99)00151-6

Huang S, Titus SJ, Wiens DP, 1992. Comparison of nonlinear height-diameter functions for major Alberta tree species. Can J For Res 22: 1297-1304. https://doi.org/10.1139/x92-172

Judge GG, Hill RC, Griffiths W, Lutkepohl H, Lee TC, 1982. Introduction to the Theory and Practice of Econometrics. John Wiley and Sons Ltd.

Lappi J, 1991. Calibration of height and volume equations with random parameters. For Sci 37: 781-801.

Lappi J, 1997. A longitudinal analysis of height/diameter curves. For Sci 43: 555-570.

Lee SH, Chan CS, Wilkin P, Remagnino P, 2015. Deep-plant: Plant identification with convolutional neural networks. In, 2015 IEEE International Conference on Image Processing (ICIP). IEEE, pp. 452-456. https://doi.org/10.1109/ICIP.2015.7350839

Lei Y, 1998 Modelling forest growth and yield of Eucalyptus globulus Labill in central-interior Portugal. In. Universidadede Trás-os-Montes e Alto Douro, Vila Real, Portugal, p. 155.

Leite HG, da Silva MLM, Binoti DHB, Fardin L, Takizawa FH, 2011. Estimation of inside-bark diameter and heartwood diameter for Tectona grandis Linn. trees using artificial neural networks. Eur J For Res 130: 263-269. https://doi.org/10.1007/s10342-010-0427-7

Martin FC, Flewelling JW, 1998. Evaluation of tree height prediction models for stand inventory. West J Appl For 13: 109-119. https://doi.org/10.1093/wjaf/13.4.109

Mehtätalo L, 2004. A longitudinal height-diameter model for Norway spruce in Finland. Can J For Res 34: 131-140. https://doi.org/10.1139/x03-207

Mehtätalo L, de-Miguel S, Gregoire TG, 2015. Modeling height-diameter curves for prediction. Can J For Res 45: 826-837. https://doi.org/10.1139/cjfr-2015-0054

Mohanty SP, Hughes DP, Salathé M, 2016. Using deep learning for image-based plant disease detection. Front Plant Sci 7: 1419. https://doi.org/10.3389/fpls.2016.01419

Mugasha WA, Mauya E, Njana A, Karlsson K, Malimbwi R, Ernest S, 2019. Height-Diameter Allometry for Tree Species in Tanzania Mainland. Int J For Res 2019. https://doi.org/10.1155/2019/4832849

Nanos N, Calama R, Montero G, Gil L, 2004. Geostatistical prediction of height/diameter models. Forest Ecol Manag 195: 221-235. https://doi.org/10.1016/j.foreco.2004.02.031

Ng'andwe P, Chungu D, Yambayamba AM, Chilambwe A, 2019. Modeling the height-diameter relationship of planted Pinus kesiya in Zambia. Front Plant Sci 447: 1-11. https://doi.org/10.1016/j.foreco.2019.05.051

Nong M, Leng Y, Xu H, Li C, Ou G, 2019. Incorporating competition factors in a mixed-effect model with random effects of site quality for individual tree above-ground biomass growth of Pinus kesiya var. langbianensis. Nz J Forestry Sci 49. https://doi.org/10.33494/nzjfs492019x27x

Özçelik R, Cao QV, Trincado G, Göçer N, 2018. Predicting tree height from tree diameter and dominant height using mixed-effects and quantile regression models for two species in Turkey. Forest Ecol Manag 419: 240-248. https://doi.org/10.1016/j.foreco.2018.03.051

Özçelik R, Diamantopoulou MJ, Brooks JR, Wiant Jr HV, 2010. Estimating tree bole volume using artificial neural network models for four species in Turkey. J Environ Manage 91: 742-753. https://doi.org/10.1016/j.jenvman.2009.10.002

Özçelik R, Diamantopoulou MJ, Crecente-Campo F, Eler U, 2013. Estimating Crimean juniper tree height using nonlinear regression and artificial neural network models. Forest Ecol Manag 306: 52-60. https://doi.org/10.1016/j.foreco.2013.06.009

Özçelik R, Diamantopoulou MJ, Eker M, Gürlevık N, 2017. Artificial Neural Network Models: An Alternative Approach for Reliable Aboveground Pine Tree Biomass Prediction. For Sci 63: 291-302. https://doi.org/10.5849/FS-16-006

Özçelik R, Diamantopoulou MJ, Wiant Jr HV, Brooks JR, 2008. Comparative study of standard and modern methods for estimating tree bole volume of three species in Turkey. Forest Prod J 58: 73.

Paulo JA, Tome J, Tome M, 2011. Nonlinear fixed and random generalized height-diameter models for Portuguese cork oak stands. Ann For Sci 68: 295-309. https://doi.org/10.1007/s13595-011-0041-y

Pinheiro J, Bates D, 2000. Mixed-Effects Models in S and S-PLUS Springer-Verlag, New York. https://doi.org/10.1007/978-1-4419-0318-1

Poudel KP, Cao QV, 2013. Evaluation of methods to predict Weibull parameters for characterizing diameter distributions. For Sci 59: 243-252. https://doi.org/10.5849/forsci.12-001

R Development Core Team, 2018 R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. In.

Robinson AP, Duursma RA, Marshall JD, 2005. A regression-based equivalence test for model validation: shifting the burden of proof. Tree Physiol 25: 903-913. https://doi.org/10.1093/treephys/25.7.903

Robinson AP, Froese RE, 2004. Model validation using equivalence tests. Ecol Model 176: 349-358. https://doi.org/10.1016/j.ecolmodel.2004.01.013

Sánchez CAL, Varela JG, Dorado FC, Alboreca AR, Soalleiro RR, González JGÁ, Rodríguez FS, 2003. A height-diameter model for Pinus radiata D. Don in Galicia (Northwest Spain). Ann For Sci 60: 237-245. https://doi.org/10.1051/forest:2003015

Schnute J, 1981. A versatile growth model with statistically stable parameters. Can J Fish Aquat Sci 38: 1128-1140. https://doi.org/10.1139/f81-153

Schröder J, González JGÁ, 2001. Comparing the performance of generalized diameter-height equations for maritime pine in Northwestern Spain. FCUTFJ 120: 18-23. https://doi.org/10.1007/BF02796077

Searle S, Casella G, McCulloch CJINY, 1992. Variance components. A John Wiley & Sons. https://doi.org/10.1002/9780470316856

Sharma M, Parton J, 2007. Height-diameter equations for boreal tree species in Ontario using a mixed-effects modeling approach. Forest Ecol Manag 249: 187-198. https://doi.org/10.1016/j.foreco.2007.05.006

Sharma M, Yin Zhang S, 2004. Height-diameter models using stand characteristics for Pinus banksiana and Picea mariana. Scand J For Res 19: 442-451. https://doi.org/10.1080/02827580410030163

Sharma R, Vacek Z, Vacek S, 2016. Nonlinear mixed effect height-diameter model for mixed species forests in the central part of the Czech Republic. J For Sci 62: 470-484. https://doi.org/10.17221/41/2016-JFS

Sladojevic S, Arsenovic M, Anderla A, Culibrk D, Stefanovic D, 2016. Deep neural networks-based recognition of plant diseases by leaf image classification. Comput Intel Neurosc 2016. https://doi.org/10.1155/2016/3289801

Srivastava N, Hinton G, Krizhevsky A, Sutskever I, Salakhutdinov R, 2014. Dropout: a simple way to prevent neural networks from overfitting. J Mach Learn Res 15: 1929-1958.

Sun Y, Liu Y, Wang G, Zhang H, 2017. Deep learning for plant identification in natural environment. Comput Intel Neurosc 2017. https://doi.org/10.1155/2017/7361042

Temesgen H, Gadow KV, 2004. Generalized height-diameter models-an application for major tree species in complex stands of interior British Columbia. Eur J For Res 123: 45-51. https://doi.org/10.1007/s10342-004-0020-z

Trincado G, VanderSchaaf CL, Burkhart HE, 2007. Regional mixed-effects height-diameter models for loblolly pine (Pinus taeda L.) plantations. Eur J For Res 126: 253-262. https://doi.org/10.1007/s10342-006-0141-7

Turkey Meteorological Service, 2017 Meteotogical Measurements of Kestel station (Bursa, Turkey) of Turkish State Meteorological Service. In, Turkish State Meteorological Service Publications.

Ubbens J, Cieslak M, Prusinkiewicz P, Stavness I, 2018. The use of plant models in deep learning: an application to leaf counting in rosette plants. Plant Methods 14: 6. https://doi.org/10.1186/s13007-018-0273-z

Van Laar A, Akça A, 2007. Forest mensuration. Springer Science & Business Media. https://doi.org/10.1007/978-1-4020-5991-9

West P, Ratkowsky D, Davis A, 1984. Problems of hypothesis testing of regressions with multiple measurements from individual sampling units. Forest Ecol Manag 7: 207-224. https://doi.org/10.1016/0378-1127(84)90068-9

Wykooff WR, Crookston NL, Stage AR, 1982. Users's guide to the Stand Prognosis Model. USDA Forest Service, Intermountain Forest and Range Expt. Sta., Gen. Tech. Re INT-133, p 112. https://doi.org/10.5962/bhl.title.109367

Published
2020-11-16
How to Cite
Ercanli, İlker. (2020). Artificial intelligence with deep learning algorithms to model relationships between total tree height and diameter at breast height. Forest Systems, 29(2), e013. https://doi.org/10.5424/fs/2020292-16393
Section
Research Articles