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<article xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" article-type="research-article" dtd-version="3.0" xml:lang="en">
   <front>
      <journal-meta>
         <journal-id journal-id-type="publisher-id">FS</journal-id>
         <journal-title-group>
            <journal-title>Forest Systems</journal-title>
            <abbrev-journal-title>FS</abbrev-journal-title>
         </journal-title-group>
         <issn pub-type="epub">2171-9292</issn>
         <publisher>
            <publisher-name>Instituto Nacional de Investigacion y Tecnologia Agraria y Alimentaria (INIA)</publisher-name>
         </publisher>
      </journal-meta>
      <article-meta>
         <article-id pub-id-type="publisher-id">14104</article-id>
         <article-id pub-id-type="doi">10.5424/fs/2019281-14104</article-id>
         <article-categories>
            <subj-group subj-group-type="heading">
               <subject>RESEARCH ARTICLE</subject>
            </subj-group>
         </article-categories>
         <title-group>
            <article-title>Evaluation of direct and indirect methods for modelling the joint distribution of tree diameter and height data with the bivariate Johnson's SBB function to forest stands</article-title>
         </title-group>
         <contrib-group>
            <contrib contrib-type="author" corresp="no">
               <name>
                  <surname>Gorgoso-Varela</surname>
                  <given-names>José Javier</given-names>
                  <aff>f&#246;ra forest technologies sll. Campus Duques de Soria. 42004 Soria. Spain.</aff>
               </name>
            </contrib>
            <contrib contrib-type="author" corresp="yes">
               <name>
                  <surname>Nwabueze Ogana</surname>
                  <given-names>Friday</given-names>
                  <aff>Department of Social and Environmental Forestry, University of Ibadan, Ibadan, Nigeria.</aff>
               </name>
            </contrib>
            <contrib contrib-type="author" corresp="no">
               <name>
                  <surname>Alonso-Ponce</surname>
                  <given-names>Rafael</given-names>
                  <aff>f&#246;ra forest technologies sll. Campus Duques de Soria. 42004 Soria. Spain.</aff>
                  <aff>Sustainable Forest Management Research Institute University of Valladolid-INIA, Campus Duques de Soria. 42004 Soria. Spain.</aff>
               </name>
            </contrib>
         </contrib-group>
         <author-notes>
            <corresp>
               should be addressed to Friday Nwabueze Ogana:
               <email xlink:href="fn.ogana@ui.edu.ng">fn.ogana@ui.edu.ng</email>
            </corresp>
         </author-notes>
         <pub-date pub-type="epub">
            <day>01</day>
            <month>03</month>
            <year>2019</year>
         </pub-date>
         <pub-date pub-type="collection">
            <year>2019</year>
         </pub-date>
         <volume>28</volume>
         <issue>1</issue>
         <elocation-id content-type="doi">10.5424/fs/2019281-14104</elocation-id>
         <history>
            <date date-type="recibido">
               <day>18</day>
               <month>10</month>
               <year>2018</year>
            </date>
            <date date-type="aceptado">
               <day>17</day>
               <month>04</month>
               <year>2019</year>
            </date>
         </history>
         <permissions>
            <copyright-statement>© 2019 INIA</copyright-statement>
            <copyright-year>2019</copyright-year>
            <license license-type="open-access" xlink:href="http://creativecommons.org/licenses/by-nc/3.0/">
               <license-p>This is an open access article distributed under the terms of the Creative Commons Attribution 4.0 International (CC-by 4.0) License.</license-p>
            </license>
         </permissions>
         <abstract id="abstract01">
            <title>Abstract</title>
            <p>
               <italic>Aim of study</italic>
               : In this study, both the direct and indirect methods by conditional maximum likelihood (CML) and moments for fitting Johnson's S
               <sub>BB</sub>
               were evaluated. To date, Johnson's S
               <sub>BB</sub>
               has been fitted by either indirect (two-stage) method using well-known procedures for the marginal diameter and heights, or direct methods, where all parameters are estimated at once. Application of bivariate Johnson's S
               <sub>BB</sub>
               for predicting height and improving volume estimation requires a suitable fitting method.
               <italic>Area of study:</italic>
               :
               <italic>E. globulus, P. pinaster</italic>
               and
               <italic>P. radiata</italic>
               stands in northwest Spain.
               <italic>Material and methods:</italic>
               The data set comprised of 308, 184 and 96 permanent sample plots (PSPs) from the aforementioned species. The suitability of the method was evaluated based on height and volume prediction. Indices including coefficient of determination (R
               <sup>2</sup>
               ), root mean square Error (RMSE), model efficiency (MEF), Bayesian Information Criterion (BIC) and Hannan-Quinn Criterion (HQC) were used to assess the model predictions. Significant difference between observed and predicted tree height and volumes were tested using paired sample t-test at 5% level for each plot by species.
               <italic>Main results</italic>
               : The indirect method by CML was the most suitable method for height and volume prediction in the three species. The R
               <sup>2</sup>
               and RMSE for height prediction ranged from 0.994 - 0.820 and 1.454 - 1.676, respectively. The percentage of plot in which the observed and predicted heights were significant was 0.32%. The direct method was the least performed method especially for height prediction in
               <italic>E. globulus</italic>
               .
               <italic>Research highlights</italic>
               : The indirect (two-stage) method, especially by conditional maximum likelihood, was the most suitable method for the bivariate Johnson's S
               <sub>BB</sub>
               distribution.
            </p>
         </abstract>
         <kwd-group>
            <title>Key words:</title>
            <kwd>conditional maximum likelihood;</kwd>
            <kwd>moments;</kwd>
            <kwd>two-stage method;</kwd>
            <kwd>direct method;</kwd>
            <kwd>tree volume.</kwd>
         </kwd-group>
         <p>
            <bold>Authors´ contributions:</bold>
            JJG: conceptualized the study, provided the background of the research and fitted the indirect method of the Johnson's SBB; FNO: fitted the direct method and wrote the manuscript; RAP: revised, edited and did the final manuscript formatting.
         </p>
         <p>
            <bold>Supplementary material:</bold>
            Figures S1 to S3 accompany the paper on FS's website.
         </p>
         <p>
            <bold>Citation</bold>
            Gorgoso-Varela, J.J., Ogana, F.N., Alonso Ponce, R. (2019). Evaluation of direct and indirect methods for modelling the joint distribution of tree diameter and height data with the bivariate Johnson's SBB function to forest stands. Forest Systems, Volume 28, Issue 1, e004.
            <ext-link ext-link-type="uri" xlink:href="https://doi.org/10.5424/fs/2019281-14104">https://doi.org/10.5424/fs/2019281-14104</ext-link>
         </p>
         <funding-group>
            <funding-statement>
               This work was supported by the Government of Spain, Department of Economy, Industry and Competitiveness under the Torres Quevedo Contract PTQ-16-08445. The study also was financially supported by the Gobierno del Principado de Asturias through the project entitled "Estudio del crecimiento y producción de
               <italic>Pinus pinaster</italic>
               Ait. en Asturias" (CN-07-094); by the Ministerio de Ciencia e Innovación through the project entitled "Influencia de los tratamientos selvícolas de claras en la producción, estabilidad mecánica y riesgo de incendios forestales en masas de
               <italic>Pinus radiata</italic>
               D. Don y
               <italic>Pinus pinaster</italic>
               Ait. en el Noroeste de España" (AGL2008-02259), and an ongoing research project entitled "Growth and yield modelling of clonal and seedling plantations of
               <italic>Eucalyptus globulus</italic>
               Labill. of NW Spain" (code AGL2010-22308-C02-01), funded by the Ministry of Science and Innovation of Spain and the European Union through the ERDF programme for the period 2011-2013.
            </funding-statement>
         </funding-group>
      </article-meta>
      <notes>
         <p>
            <bold>Competing interests:</bold>
            The authors have declared that no competing interests exist.
         </p>
      </notes>
   </front>
   <body>
      <sec id="S1">
         <title>Introduction</title>
         <p>
            Researchers realize that volume, the primary varia­ble that forest managers are interested in, is heavily de­pendent on both tree diameter and height. A traditional practice is to fit a marginal distribution to the diameter frequency data and then use an empirical height-diameter relationship to estimate the average height per diameter class and hence the volume (
            <xref ref-type="bibr" rid="b3            ">Clutter &amp; Al­li­son, 1974</xref>
            ). Although this approach is satis­fac­to­­­ry in many situations, it is often not appropriate because the approach tends to ignore the natural relationships between tree diameters and heights by treating them separately (
            <xref ref-type="bibr" rid="b23">Schreuder &amp; Hafley, 1977</xref>
            ;
            <xref ref-type="bibr" rid="b27">Tewari &amp; von Gadow, 1999</xref>
            ).
         </p>
         <p>
            The traditional method does not quantify the distribution of heights for a given diameter and one approach for modelling the conditional height distribution for the different diameters is to use the height residuals (
            <xref ref-type="bibr" rid="b5">Gaffrey, 1996</xref>
            ). However, it is very seldom that the height residuals are homoscedastic and normally distributed. In most forest stands the variance about the diameter-height regression is not homogeneous (
            <xref ref-type="bibr" rid="b32">
               Zucchini
               <italic>et al</italic>
               ., 2001
            </xref>
            ).
         </p>
         <p>
            One of the most important elements of forest structu­re is the relationship between tree diameters and heigh­ts because information about size-class distributions of the trees within a forest stand is important for estimating product yields (
            <xref ref-type="bibr" rid="b32">
               Zucchini
               <italic>et al</italic>
               ., 2001
            </xref>
            ). The size-class distribution influences the growth potential and hence the current and future economic value of a forest stand (
            <xref ref-type="bibr" rid="b13">Knoebel &amp; Burkhart, 1991</xref>
            ). On the other hand, the social status of a tree, which reflects its further development in the aspects of growth and mor­ta­­li­ty, depends not only on its relative diameter, but also on its relative height in a stand (
            <xref ref-type="bibr" rid="b25">Siipilehto, 2000</xref>
            ). Furthermore, knowledge of the height variation, both between and within diameter classes, improves the chances of successfully imitating different types of thinnings (
            <xref ref-type="bibr" rid="b9">Hafley &amp; Buford, 1985</xref>
            ).
         </p>
         <p>
            For many years, the bivariate extension of the S
            <sub>B</sub>
            dis­tribution, the S
            <sub>BB</sub>
            (
            <xref ref-type="bibr" rid="b10">Johnson, 1949a</xref>
            and
            <xref ref-type="bibr" rid="b11">1949b</xref>
            ), has been the most commonly bivariate distribution used for modeling bivariate tree diameter-height frequency data (e.g.
            <xref ref-type="bibr" rid="b23">Schreuder &amp; Hafley, 1977</xref>
            ;
            <xref ref-type="bibr" rid="b9">Hafley &amp; Buford, 1985</xref>
            ;
            <xref ref-type="bibr" rid="b13">Knoebel &amp; Burkhart, 1991</xref>
            ;
            <xref ref-type="bibr" rid="b24">Siipileh­to, 1996</xref>
            ;
            <xref ref-type="bibr" rid="b28">Tewari &amp; von Gadow, 1997</xref>
            ;
            <xref ref-type="bibr" rid="b27">Tewari &amp; von Gadow, 1999</xref>
            ;
            <xref ref-type="bibr" rid="b32">
               Zucchini
               <italic>et al</italic>
               ., 2001
            </xref>
            ;
            <xref ref-type="bibr" rid="b14">
               Li
               <italic>et al</italic>
               ., 2002
            </xref>
            ;
            <xref ref-type="bibr" rid="b30">Wang &amp; Rennolls, 2007</xref>
            ,
            <xref ref-type="bibr" rid="b7">
               Gorgoso-Varela
               <italic>et al</italic>
               ., 2016
            </xref>
            ;
            <xref ref-type="bibr" rid="b21">
               Ogana
               <italic>et al</italic>
               ., 2018
            </xref>
            ;
            <xref ref-type="bibr" rid="b19">Ogana, 2018a</xref>
            ). The Johnson's S
            <sub>BB</sub>
            is developed by applying a four-parameter logistic transformation to each of the component variables of a standard bivariate normal distribution (
            <xref ref-type="bibr" rid="b11">Johnson, 1949b</xref>
            ;
            <xref ref-type="bibr" rid="b31">Wang, 2005</xref>
            ;
            <xref ref-type="bibr" rid="b7">
               Gorgoso-Varela
               <italic>et al</italic>
               ., 2016
            </xref>
            ). The fitting of the joint distribution of diameters and heights is called bivariate distribution modeling (
            <xref ref-type="bibr" rid="b21">
               Ogana
               <italic>et al</italic>
               ., 2018
            </xref>
            ). Bivariate distribution modelling allows for the generation of bivariate frequencies of tree diameter and height (
            <xref ref-type="bibr" rid="b28">Tewari &amp; von Gadow, 1997</xref>
            ).
         </p>
         <p>
            The parameters of the Johnson's S
            <sub>BB</sub>
            distribution ha­ve been estimated with both the indirect and direct me­thods. The indirect method fits the bivariate Johnson's S
            <sub>BB</sub>
            distribution by two-stage where the marginals are first fitted separately for the diameter and height; the estimates are then used to compute the parameter of association. Examples of the indirect method that have been reported in forestry literature include Conditional Maximum Likelihood (CML), moments, mode and Knoebel and Burkhart methods (
            <xref ref-type="bibr" rid="b9">Hafley &amp; Buford, 1985</xref>
            ;
            <xref ref-type="bibr" rid="b28">Tewari &amp; von Gadow, 1997</xref>
            ;
            <xref ref-type="bibr" rid="b13">Knoebel &amp; Burkhart, 1991;</xref>
            <xref ref-type="bibr" rid="b24">Siipilehto, 1996</xref>
            ;
            <xref ref-type="bibr" rid="b27">Tewari &amp; von Gadow, 1999</xref>
            ; Cas­tedo-Dorado
            <italic>et al</italic>
            ., 2001;
            <xref ref-type="bibr" rid="b14">
               Li
               <italic>et al</italic>
               ., 2002
            </xref>
            ;
            <xref ref-type="bibr" rid="b19">Oga­na, 2018a</xref>
            ). Of these indirect methods, CML and moments ha­ve been reported as the best methods (
            <xref ref-type="bibr" rid="b19">Ogana, 2018a</xref>
            ). In the direct method, all the parameters in the bivaria­te dis­tri­bu­tion are estimated simultaneously (
            <xref ref-type="bibr" rid="b31">Wang, 2005</xref>
            ;
            <xref ref-type="bibr" rid="b17">Mønness, 2015</xref>
            ;
            <xref ref-type="bibr" rid="b7">
               Gorgoso-Varela
               <italic>et al</italic>
               ., 2016
            </xref>
            ;
            <xref ref-type="bibr" rid="b21">
               Oga­na
               <italic>et al</italic>
               ., 2018
            </xref>
            ). However, these two methods (i.e., direct and indirect) of estimating the parameters of Johnson's S
            <sub>BB</sub>
            distribution have never been compared using the same sample. The method used to calibrate the distribution matters in order to evaluate the accuracy of diameter and height predictions (
            <xref ref-type="bibr" rid="b19">Ogana, 2018a</xref>
            ). Thus, the objective of the study was to com­pa­re the indirect fitting method for the Johnson's S
            <sub>B</sub>
            based on two-stage method by the Conditional Maximum Likelihood and moments methods with the direct method where the parameters are estimated simultaneously.
         </p>
      </sec>
      <sec id="S2">
         <title>Material and methods</title>
         <sec id="S2.1">
            <title>Data set</title>
            <p>
               The data used for this study were obtained from three temperate species - Tasmanian blue gum (
               <italic>Eucalyptus globulus</italic>
               Labill) and two species of pine - Maritime pine (
               <italic>Pinus pinaster</italic>
               Ait) and Monterrey pine (
               <italic>Pinus radiata</italic>
               D. Don) in Spain.
               <italic>E. globulus</italic>
               stands occupy 320,774 ha in Galicia. The pure stands of
               <italic>P. pinaster</italic>
               cover 217,281 ha and 22,523 ha in the regions of Galicia and Asturias, respectively. The plantations of
               <italic>P. radiata</italic>
               occupy 96,177 ha and 25,385 ha in Galicia and Asturias, respectively (
               <xref ref-type="bibr" rid="b16">MMAMRM, 2011</xref>
               ). A total of 308 permanent sample plots (PSPs) from
               <italic>E. globulus</italic>
               , 184 PSPs from
               <italic>P. pinaster</italic>
               stands and 96 PSPs from
               <italic>P. radia­ta</italic>
               stan­ds were used for this study. The plot sizes ran­ged from 375 to 900 m
               <sup>2</sup>
               ; to achieve a minimum of 30 trees per plot. Diameter at breast height (Dbh at 1.3 m above the ground) and total height were measured with calliper and hypsometer to a precision of the nearest 0.1 cm and 0.1 m, respectively. A total of 16382, 17845 and 12722 trees were measured from
               <italic>E. globulus</italic>
               ,
               <italic>P. pinaster</italic>
               and
               <italic>P. radiata</italic>
               , respectively. The descriptive statistics of the inventory data are presented in <xref ref-type="table" rid="T1">Table 1</xref>.
            </p>
            <table-wrap id="T1">
    <label>Table 1.</label>
    <caption>
    <title>Summary statistics of the tree variables. </title>
    </caption>
    <graphic xlink:href="fs_e004_t01.jpg" xmlns:xlink="http://www.w3.org/1999/xlink"/>
</table-wrap>

         </sec>
         <sec id="S2.2">
            <title>
               The Johnson's Univariate (S
               <sub>B</sub>
               ) and Bivariate Distribution (S
               <sub>BB</sub>
               )
            </title>
            <p>
               The univariate Johnson's S
               <sub>B</sub>
               distribution (
               <xref ref-type="bibr" rid="b10">Johnson, 1949a</xref>
               ) is expressed as:
            </p>
            <p />
            <p />
            <p />
           <graphic id="form1" xlink:href="fs_e004_form1.jpg" xmlns:xlink="http://www.w3.org/1999/xlink"/>
            <p />
            <p />
            <p />
            <p>Where: &#958; &lt; <italic>x</italic> &lt; &#958; + &#955;, -&#8734; &lt; &#958; &lt; + &#8734;, -&#8734; &lt; <italic>y</italic> &lt; +&#8734;, &#955;  &gt; t0, and &#948; &gt; 0.</p>
            <p>
            &#958; shape parameters (asymmetry and kurtosis parameters, respectively). The Johnson's S
               <sub>BB</sub>
               (
               <xref ref-type="bibr" rid="b11">Johnson, 1949b</xref>
               ) is the extension of the univariate Johnson's S
               <sub>B</sub>
               distribution; given by:
            </p>
            <p />
            <p />
            <graphic id="form2" xlink:href="fs_e004_form2.jpg" xmlns:xlink="http://www.w3.org/1999/xlink"/>
            <p />
            <p />
            <p>Where:</p>
            <p />
            <graphic id="form3" xlink:href="fs_e004_form3.jpg" xmlns:xlink="http://www.w3.org/1999/xlink"/>
            <p />
            <p />
            <graphic id="form4" xlink:href="fs_e004_form4.jpg" xmlns:xlink="http://www.w3.org/1999/xlink"/>
            <p />
            <p />
           <graphic id="form5" xlink:href="fs_e004_form5.jpg" xmlns:xlink="http://www.w3.org/1999/xlink"/>
            <p />
            <p />
            <p>
               Where: ρ is the correlation coefficient between Z
               <sub>d</sub>
               and Z
               <sub>h</sub>
               , the subscripts
               <italic>d</italic>
               and
               <italic>h</italic>
               in equations represent diameter and height, respectively.
            </p>
         </sec>
         <sec id="S2.3">
            <title>Fitting Methods</title>
            <p>
               Indirect method: this method fits the bivariate Johnson's S
               <sub>BB</sub>
               distribution by a two-stage approach where the marginals are first fitted separately for the diameter and height. The estimates from the first stage are then used to compute the correlation parameter (as shown in Eq 3). Generally, fitting Johnson's S
               <sub>BB</sub>
               distribution requires the location (
               <italic>&#958;</italic>
               ) and scale (&#955;) to be predetermined (related to minimum and range of the tree variable) while
               <italic>&#948;</italic>
               and
               <italic>&#8509;</italic>
               can be analytically deduced through different approaches (
               <xref ref-type="bibr" rid="b23">Schreuder &amp; Hafley, 1977</xref>
               ). The method of CML and moments were the indirect methods considered in this study as recommended by
               <xref ref-type="bibr" rid="b19">Ogana (2018a)</xref>
               .
            </p>
            <p>
               <italic>Conditional Maximum Likelihood (CML)</italic>
               : The va­lu­es of the parameters were obtained with these ex­pressions:
            </p>
            <p />
            <graphic id="form6" xlink:href="fs_e004_form6.jpg" xmlns:xlink="http://www.w3.org/1999/xlink"/>
            <p />
            <p />
            <graphic id="form7" xlink:href="fs_e004_form7.jpg" xmlns:xlink="http://www.w3.org/1999/xlink"/>
            <p />
            <p />
           <graphic id="form8" xlink:href="fs_e004_form8.jpg" xmlns:xlink="http://www.w3.org/1999/xlink"/>
            <p />
            <p />
            <graphic id="form9" xlink:href="fs_e004_form9.jpg" xmlns:xlink="http://www.w3.org/1999/xlink"/>
            <p />
            <p />
           <graphic id="form10" xlink:href="fs_e004_form10.jpg" xmlns:xlink="http://www.w3.org/1999/xlink"/>
            <p />
            <p>
               Where:
               <italic>x</italic>
               <sub>i</sub>
               (
               <italic>i</italic>
               = 1, 2, …,
               <italic>n</italic>
               ) = tree diameters and heights.
            </p>
            <p>
               The location (
               <italic>&#958;</italic>
               ) and scale (
               <italic>&#955;</italic>
               ) parameters were set to equal minimum diameter times 0.75 (0.75*D
               <sub>min</sub>
               ) and maximum diameter, respectively for the marginal distribution of diameter. These parameters were set at 1.3 and maximum height for the marginal height distribution. The factor 0.75 was adopted because
               <xref ref-type="bibr" rid="b8">
                  Gor­goso
                  <italic>et al</italic>
                  . (2012)
               </xref>
               used 0.75 D
               <sub>min</sub>
               for this parameter
               <italic>&#958;</italic>
               to achieved good result compared to other cons­tra­in­ts in
               <italic>Pinus pinaster</italic>
               and
               <italic>Pinus radiata</italic>
               . The same species from the same region were used in the study at hand. The CML has been applied to fit the Johnson's S
               <sub>BB</sub>
               by di­ffe­rent authors, including
               <xref ref-type="bibr" rid="b13">Knoebel &amp; Burkhart (1991)</xref>
               ;
               <xref ref-type="bibr" rid="b24">Siipilehto (1996)</xref>
               ;
               <xref ref-type="bibr" rid="b28">Tewari &amp; von Gadow (1997)</xref>
               ;
               <xref ref-type="bibr" rid="b27">Tewari &amp; von Gadow (1999)</xref>
               ;
               <xref ref-type="bibr" rid="b2">
                  Castedo-Dorado
                  <italic>et al</italic>
                  . (2001)
               </xref>
               ;
               <xref ref-type="bibr" rid="b19">Ogana (2018a)</xref>
               .
            </p>
            <p>
               <italic>Method of Moments:</italic>
               this method is based on the functional relationship between the first and second moments of diameter and height and the parameters of the S
               <sub>BB</sub>
               distribution.
               <xref ref-type="bibr" rid="b19">Ogana (2018a)</xref>
               recently used this method to fit the S
               <sub>BB</sub>
               distribution. It is given by:
            </p>
            <graphic id="form11" xlink:href="fs_e004_form11.jpg" xmlns:xlink="http://www.w3.org/1999/xlink"/>
            <p />
            <p />
            <graphic id="form12" xlink:href="fs_e004_form12.jpg" xmlns:xlink="http://www.w3.org/1999/xlink"/>
            <p />
            <p />
            <graphic id="form13" xlink:href="fs_e004_form13.jpg" xmlns:xlink="http://www.w3.org/1999/xlink"/>
            <p />
            <p />
            <graphic id="form14" xlink:href="fs_e004_form14.jpg" xmlns:xlink="http://www.w3.org/1999/xlink"/>
            <p />
            <p>
               Where:
               <italic>X</italic>
               = mean diameters and heights of the plot, &#963;
               <sub>x</sub>
               = plot diameter and height standard deviations and
               <italic>Sd(x)</italic>
               = modified standard deviation. The same procedure with CML was used for &#955; and
               <italic>&#958;.</italic>
            </p>
            <p>
               Direct method: in this method, all parameters in the bivariate Johnson's S
               <sub>BB</sub>
               distribution were estimated simultaneously using maximum likelihood estimation. However, the location (
               <italic>&#958;</italic>
               ) and scale (&#955;) parameters were predetermined with the same procedure as the indirect method. This method was applied by
               <xref ref-type="bibr" rid="b31">Wang (2005)</xref>
               ,
               <xref ref-type="bibr" rid="b29">
                  Wang
                  <italic>et al</italic>
                  . (2008)
               </xref>
               and
               <xref ref-type="bibr" rid="b7">
                  Gorgoso-Varela
                  <italic>et al</italic>
                  . (2016)
               </xref>
               . These authors used the normal copula for this distribution. The joint density of the S
               <sub>BB</sub>
               function derived from the normal copula is given by:
            </p>
            <p />
            <p />
            <graphic id="form15" xlink:href="fs_e004_form15.jpg" xmlns:xlink="http://www.w3.org/1999/xlink"/>
            <p />
            <p />
            <p>and the likelihood function is expressed as:</p>
            <p />
            <p />
            <p />
            <graphic id="form16" xlink:href="fs_e004_form16.jpg" xmlns:xlink="http://www.w3.org/1999/xlink"/>
            <p />
            <p />
            <p>
               where
               <italic>f(d)</italic>
               and
               <italic>g(h)</italic>
               are marginal Johnson SB densities for diameter (
               <italic>d</italic>
               ) and height (
               <italic>h</italic>
               ), respectively defined in <xref ref-type="disp-formula" rid="form1">equation 1</xref>;
               <italic>θ</italic>
               parameters to the estimated and N is the number of observations.
            </p>
            <p>
               The indirect method (CML and moments) esti­mations were obtained using SAS/STAT
               <sup>TM</sup>
               software (SAS Institute 2003). The computation of the direct method was carried out using the 'optim' (optimal) function in R (
               <xref ref-type="bibr" rid="b22">R Core Team, 2017</xref>
               ). The Nelder-Mead sim­plex algorithm (
               <xref ref-type="bibr" rid="b18">Nelder &amp; Mead, 1965</xref>
               ) was used for the 'optim'.
            </p>
         </sec>
         <sec id="S2.4">
            <title>Model Evaluation</title>
            <p />
            <p>
               The suitability of the direct and indirect methods for fitting S
               <sub>BB</sub>
               distribution was evaluated by tree height and volume predictions. Prediction of expec­ted tree height given diameter and the estimation of stand volume are the main applications of bivariate dis­tribution. Individual tree heights were predicted with the S
               <sub>BB</sub>
               median regression expressed as:
            </p>
            <p />
            <p />
           <graphic id="form17" xlink:href="fs_e004_form17.jpg" xmlns:xlink="http://www.w3.org/1999/xlink"/>
            <p />
            <p />
            <graphic id="form26" xlink:href="fs_e004_form26.jpg" xmlns:xlink="http://www.w3.org/1999/xlink"/>
            <graphic id="form27" xlink:href="fs_e004_form27.jpg" xmlns:xlink="http://www.w3.org/1999/xlink"/>
            <p>
               are the estimated parameters from the direct and indirect methods.
               <italic>h</italic>
               = total tree height ­(m) and
               <italic>d</italic>
               = tree diameter at 1.30 m (cm). The
               <italic>&#934;</italic>
               parameter determines the shape of the regression curve while
               <italic>ρ</italic>
               influences the slope. The relationship can only be line­ar if
               <italic>ρ&#948;</italic>
               <sub>d</sub>
               = &#948;
               <sub>h</sub>
               and ρ&#8509;
               <sub>d</sub>
               = &#8509;
               <sub>h</sub>
               .
            </p>
            <p>
               Individual tree volume equation developed by
               <xref ref-type="bibr" rid="b6">García-Villabrille (2015)</xref>
               for
               <italic>E. globulus</italic>
               and
               <xref ref-type="bibr" rid="b4">
                  Diéguez-Aranda
                  <italic>et al</italic>
                  . (2009)
               </xref>
               for
               <italic>P. pinaster</italic>
               and
               <italic>P. radiata</italic>
               we­re used to obtain observed and predicted tree volume. The procedure of
               <xref ref-type="bibr" rid="b14">
                  Li
                  <italic>et al</italic>
                  . (2002)
               </xref>
               and
               <xref ref-type="bibr" rid="b19">Ogana (2018a)</xref>
               was used in this study. Observed tree volume was computed by substituting the observed diameter and height into the individual tree volume equations. The predicted individual tree volumes were obtained from the observed diameter and predicted tree height by S
               <sub>BB</sub>
               height-diameter median regression using direct and indirect methods:
            </p>
            <p>
               <italic />
            </p>
            <graphic id="form18" xlink:href="fs_e004_form18.jpg" xmlns:xlink="http://www.w3.org/1999/xlink"/>
            <p>
               <italic>v</italic>
               =2.993 x 10
               <sup>-5</sup>
               <italic>d</italic>
               <sup>1.973</sup>
               <italic>h</italic>
               <sup>1.059</sup>
               <italic />
            </p>
            <p>
               <italic />
            </p>
           <graphic id="form19" xlink:href="fs_e004_form19.jpg" xmlns:xlink="http://www.w3.org/1999/xlink"/>
            <p>
               <italic>v</italic>
               =3.974 x 10
               <sup>-5</sup>
               <italic>d</italic>
               <sup>1.876</sup>
               <italic>h</italic>
               <sup>1.079</sup>
            </p>
            <p>
               <italic />
            </p>
            <graphic id="form20" xlink:href="fs_e004_form20.jpg" xmlns:xlink="http://www.w3.org/1999/xlink"/>
            <p>
               <italic>v</italic>
               =4.851 x 10
               <sup>-5</sup>
               <italic>d</italic>
               <sup>1.883</sup>
               <italic>h</italic>
               <sup>1.004</sup>
            </p>
            <p />
            <p>
               Where:
               <italic>v</italic>
               = total volume of the stem with bark (m
               <sup>3</sup>
               );
               <italic>d</italic>
               = tree diameter (cm) and
               <italic>h</italic>
               = tree height (m). The root mean square error reported by the authors for <xref ref-type="disp-formula" rid="form18">equation 18</xref>, <xref ref-type="disp-formula" rid="form19">19</xref> and <xref ref-type="disp-formula" rid="form20">20</xref> were 0.0116, 0.0156 and 0.0131, respectively.
            </p>
            <p>
               Different fit indices including coefficient of deter­mination (R
               <sup>2</sup>
               ), root mean square error (RMSE), model efficiency (MEF) (
               <xref ref-type="bibr" rid="b15">Mayer &amp; Butler, 1993</xref>
               ), Bayesian Information Criterion (BIC) and Hannan-Quinn Cri­terion (HQC) were used to assess the adequacy of the methods for height and volume predictions. In addition, significant difference between observed and predicted tree heights and volumes were tested using paired sample t-test at 5% level for each plot by species. Plot was rejected if significant difference occurs between observed height/volume and predicted height/volume for that plot at p&lt;0.05. Pairwise comparison was done with t-test because outlier was not detected in the data.
            </p>
            <p />
           <graphic id="form21" xlink:href="fs_e004_form21.jpg" xmlns:xlink="http://www.w3.org/1999/xlink"/>
            <p />
           <graphic id="form22" xlink:href="fs_e004_form22.jpg" xmlns:xlink="http://www.w3.org/1999/xlink"/>
            <p />
            <p />
            <graphic id="form23" xlink:href="fs_e004_form23.jpg" xmlns:xlink="http://www.w3.org/1999/xlink"/>
            <p />
            <p />
            <graphic id="form24" xlink:href="fs_e004_form24.jpg" xmlns:xlink="http://www.w3.org/1999/xlink"/>
            <p />
            <p />
            <graphic id="form25" xlink:href="fs_e004_form25.jpg" xmlns:xlink="http://www.w3.org/1999/xlink"/>
            <p />
            <p>
               Where: RSS = residual sum of square, n = sample size, p = number of parameters;
               <italic>Y</italic>
               <sub>i</sub>
               = average tree height or volume; Y
               <sub>i</sub>
               is the observed value and
               <italic>Y</italic>
               <sub>i</sub>
               is the theoretical value predicted by the model.
            </p>
         </sec>
      </sec>
      <sec id="S3">
         <title>Results</title>
         <p>
            The descriptive statistics i.e., the mean, maximum, minimum and standard deviation of the estimated parameters of the bivariate Johnson's S
            <sub>BB</sub>
            distribution are presented in <xref ref-type="table" rid="T2">Table 2</xref>. The location parameter of the marginal height distribution was set to 1.3 for both direct and indirect methods across the three species. The shape, scale and rho (ρ) parameters of the indirect methods (CML and moments) show little variations. In fact, the standard deviations of the parameters' values were the same at least up to 1 decimal place. This indicates that both CML and moments are closely related. However, estimates from the direct method were different. The standard deviations of the estimated parameters are smaller than that of CML and moments of the indirect method.
         </p>
         <table-wrap id="T2">
    <label>Table 2.</label>
    <caption>
    <title>Descriptive statistic of the Johnson's S<sub>BB</sub> parameters for the three species. </title>
    </caption>
    <graphic xlink:href="fs_e004_t02.jpg" xmlns:xlink="http://www.w3.org/1999/xlink"/>
</table-wrap>

         <p>
            The assessment of the suitability of indirect (CML and moments) and direct methods for tree height pre­diction showed that the indirect method, especially the CML method, had the highest R
            <sup>2</sup>
            and the lowest RMSE, MEF, BIC and HQC in
            <italic>E. globulus, P. pinas­ter</italic>
            and
            <italic>P. radiata</italic>
            (shown in <xref ref-type="table" rid="T3">Table 3</xref>). The R
            <sup>2</sup>
            , RMSE, MEF, BIC and HQC of CML ranged from 0.994 - 0.820, 1.454 - 1.676, 0.055 - 0.179, 4559 - 13400 and 4492 - 13335, respectively. However, the direct method had relatively lower R
            <sup>2</sup>
            and larger RMSE, MEF, BIC and HQC in
            <italic>E. globulus, P. pinaster</italic>
            and
            <italic>P. radiata</italic>
            relative to the indirect methods. The number of plot in which the observed and predicted values were significant at 5% level (t-test) was 1 out of 308 plots (equivalent to 0.32%) in
            <italic>E. globulus</italic>
            for CML. Eight (2.59%) and 14 (4.45%) plots were significant for moments and the direct methods, respectively in
            <italic>E. globulus</italic>
            . There was no significant difference between the observed and predicted tree height by CML and moments across the 184 and 96 plots in
            <italic>P. pinaster</italic>
            and
            <italic>P. radiata</italic>
            , respectively. But 4 and 5 plots were significant with the direct method in
            <italic>P. pinaster</italic>
            and
            <italic>P. radiata</italic>
            , respecti­­ve­­ly at the specified level.
         </p>
         <table-wrap id="T3">
    <label>Table 3.</label>
    <caption>
    <title>Fit indices and number of plot rejection by t-test at α = 0.05 for height
prediction. </title>
    </caption>
    <graphic xlink:href="fs_e004_t03.jpg" xmlns:xlink="http://www.w3.org/1999/xlink"/>
</table-wrap>

         <p>
            In the case of tree volume prediction, indirect (CML and moments) and direct methods performed relative­ly the same (<xref ref-type="table" rid="T4">Table 4</xref>). The methods had the same R
            <sup>2</sup>
            , RMSE and MEF values up to 2 decimal places. The direct method had lowest BIC and HQC in
            <italic>E. globulus</italic>
            and
            <italic>P. radiata</italic>
            . The number of plot in which the obser­ved and predicted values was significant at 5% level for CML was like the result in tree height prediction (i.e., 1, 0, 0). However, 6, 6, and 3 plots were significant in
            <italic>E. globulus, P. pinaster</italic>
            and
            <italic>P. radiata</italic>
            , respectively for the direct method.
         </p>
         <table-wrap id="T4">
    <label>Table 4.</label>
    <caption>
    <title>Fit indices and number of plot rejection by t-test at α = 0.05 for
volume prediction. </title>
    </caption>
    <graphic xlink:href="fs_e004_t04.jpg" xmlns:xlink="http://www.w3.org/1999/xlink"/>
</table-wrap>

         <p>
            The mean of the residuals from the height-diame­ter median regression was computed across DBH cla­sses and plotted accordingly for the three species. The data were group into DBH classes of 5 cm interval and the mean residual prediction for each class by species was assessed. The graphs showed that CML and moments over- and under-estimated the tree height in the larger diameter classes (&gt; 42.5 cm) in
            <italic>E. globulus</italic>
            and
            <italic>P. pinaster</italic>
            (<xref ref-type="fig" rid="F1">Fig. 1a to c</xref>). Nevertheless, their prediction errors lie within the range of - 0.5 to 0.5, except in the larger DBH classes. Conversely, the direct method did not only over- and under-estimate tree height in the larger diameter classes but also over-estimate tree heights in the lower diameter classes in
            <italic>E. globulus</italic>
            . The mean residual height prediction for both direct and indirect method were relatively poor in
            <italic>P. radiata</italic>
            .
         </p>
         <fig id="F1">
    <label>Figure 1.</label>
    <caption>
    <title>Mean height residual against diameter at 1.30 m of CML,
moments and direct methods in (a) <italic>E. globulus</italic>, (b) <italic>P. pinaster</italic> and (c) <italic>P.
radiata.</italic></title>
    </caption>
    <graphic xlink:href="fs_e004_f01.jpg" xmlns:xlink="http://www.w3.org/1999/xlink"/>
</fig>

         <p>
            Furthermore, the graph of residual against predict­ed tree volume showed that CML and moments and the direct methods occupied the same horizontal band (<xref ref-type="fig" rid="F2">Fig. 2</xref>). Their mean residuals plot lied within the range of -0.6 to 0.6, -0.6 to 0.6 and -0.4 to 0.2 in
            <italic>E. globulus, P. pinaster</italic>
            and
            <italic>P. randiata</italic>
            , respectively. Such plot is used to assess whether the residual is homoscedastic (i.e. constant variance) or heteroscedastic. The residual of the methods assessed were relatively constant.
         </p>
         <fig id="F2">
    <label>Figure 2.</label>
    <caption>
    <title>Residual against predicted volume of CML, moments and direct methods across the three species.</title>
    </caption>
    <graphic xlink:href="fs_e004_f02.jpg" xmlns:xlink="http://www.w3.org/1999/xlink"/>
</fig>

      </sec>
      <sec id="S4">
         <title>Discussion</title>
         <p>
            The direct and indirect methods of fitting Johnson's S
            <sub>BB</sub>
            have been evaluated. The methods follow similar trend across
            <italic>E. globulus, P. pinaster,</italic>
            and
            <italic>P. radiata</italic>
            with CML being the best for tree height and volume predictions. The number of plots rejected by t-test increased from CML to moments and to the direct method. The percentage of rejections in
            <italic>E. globulus</italic>
            was higher than the other species because some plots of coppice stands were considered, in which the minimum diameter considered was less than 5 cm (value of the minimum diameter considered for
            <italic>Pinus pinaster</italic>
            and
            <italic>Pinus radiata</italic>
            stands). There were also biases in the larger diameter classes (&gt; 42.5 cm) for all methods.
            <xref ref-type="bibr" rid="b12">
               Kalbi
               <italic>et al</italic>
               . (2017)
            </xref>
            attributed this bias to the small number of trees in the larger diameter class. Few trees were found in the diameter classes &gt; 42 cm across the three species. The Johnson's height-diameter function often perform well if parameter
            <italic>&#934;</italic>
            i.e., the determinant of the regression curve is greater than one (
            <xref ref-type="bibr" rid="b27">Tewari &amp; von Gadow, 1999</xref>
            ). In this study,
            <italic>&#934;</italic>
            had values greater than one in some of the sample plots for CML, moments and direct methods. The model performed relatively well in these plots.
         </p>
         <p>
            Furthermore, the values of the BIC and HQC diffe­rence show that the method of CML fits the diameter-height data better than direct methods for height prediction in
            <italic>E. globulus, P. pinaster</italic>
            and
            <italic>P. radiata.</italic>
            As a rule of thumb, a minimum &#8710;AIC/&#8710;BIC/&#8710;HQC of &#8804; 2 is required for two models to be indistinguishable (
            <xref ref-type="bibr" rid="b20">Ogana, 2018b</xref>
            ; Tewari &amp; Singh, 2018). Though, the measures of the accuracy of the estimates (RMSE) and the relative measures of the model performance (MEF) look quite similar for all methods, the CML seems to be slightly better. Parallel observation was reported in
            <xref ref-type="bibr" rid="b19">Ogana (2018a)</xref>
            , who evaluated the performance of CML, moments, Knoebel and Burkhart (KB) and mode methods for height and volume predictions. The author found CML and moment to be the best methods for predicting tree height and volume in
            <italic>E. camaldulensis</italic>
            Dehn.
         </p>
         <p>
            It is obvious from this study that when a complex fitting approach does not outperform another simpler one it is convenient to take the latter. Estimating the parameters of Johnson's S
            <sub>BB</sub>
            by CML or moments is much easier and pose little computational difficulty. The CML and moments estimation procedure can even be carried out on Microsoft excel platform. However, the direct method involves complicated algorithm using maximum likelihood technique. This often requires writing the log-likelihood function and the specification of initial values for the parameters which may not achieve convergence (
            <xref ref-type="bibr" rid="b31">Wang, 2005</xref>
            ). Given the complexity of the likelihood function, its gradient is not tractable and then numerical optimization methods have to be used (i.e. through the 'optim' function), which may be less efﬁcient than those based on derivatives. The computation procedure gets more complex as the number of parameters in the distribution increases. Bivariate Johnson's S
            <sub>BB</sub>
            has nine parameters which makes fitting somewhat complicated. Often constraints are imposed on the two location and scale parameters of the bivariate distribution to make the estimates more plausible (
            <xref ref-type="bibr" rid="b30">Wang &amp; Rennolls, 2007</xref>
            ).
            <xref ref-type="bibr" rid="b17">Mønness (2015)</xref>
            used maximum likelihood estimation to fit the Johnson's S
            <sub>BB</sub>
            distribution and compared the result with power-normal and hyperbolic height prediction model. The prediction from power-normal and hyperbolic models were better than bivariate Johnson S
            <sub>BB</sub>
            fitted with maximum likelihood. Other studies that have used maximum likelihood technique to fit the bivaria­te Johnson's S
            <sub>BB</sub>
            distributions include
            <xref ref-type="bibr" rid="b29">
               Wang
               <italic>et al</italic>
               . (2008)
            </xref>
            ,
            <xref ref-type="bibr" rid="b7">
               Gorgoso-Varela
               <italic>et al</italic>
               . (2016)
            </xref>
            and
            <xref ref-type="bibr" rid="b21">
               Ogana
               <italic>et al</italic>
               . (2018)
            </xref>
            . Satisfactory results were obtained by the authors for the Johnson's S
            <sub>BB</sub>
            relative to other bivariate functions evaluated in their study.
         </p>
         <p>
            The bivariate Johnson's S
            <sub>BB</sub>
            height-diameter median regression remains the most applied function amidst several bivariate distributions in forestry literature. This is because of its flexibility and, more importantly, because its implied relationship between height and diameter is biologically reasonable (
            <xref ref-type="bibr" rid="b1">Burkhart &amp; Tome, 2012</xref>
            ). The closed-form median regression of the Johnson's S
            <sub>BB</sub>
            height-diameter model has also enhan­ced its continuous application to forestry. This median regression is frequently used for computing percentile lines wherein bounds on height are set. These percentile lines can be used to show how the variation in height decreases with increasing tree size for a specified diameter (
            <xref ref-type="bibr" rid="b27">Tewari &amp; von Gadow, 1999</xref>
            ). The scatter plots of the Johnson's S
            <sub>BB</sub>
            me­dian regression using indirect method fitted by CML from some sample plots in
            <italic>E. globulus, P. pinaster</italic>
            and
            <italic>P. radiata</italic>
            are presen­ted in Figures S1 to S3 [suppl.].
         </p>
      </sec>
      <sec id="S5">
         <title>Conclusions</title>
         <p>
            Modelling the joint distribution of diameter and height by Johnson S
            <sub>BB</sub>
            remains an important tool for assessing the variation of tree height for a given diameter, detailed stand structure and volume estimation. Its accuracy is affected by the method of estimating the parameters of the distribution. In this study, we found the indirect (two-stage) method, especially by conditional maximum likelihood, to be the most suitable method for the bivariate Johnson's S
            <sub>BB</sub>
            distribution. This method predicted tree height and volume in
            <italic>E. globulus, P. pinaster</italic>
            and
            <italic>P. radiata</italic>
            better than the direct method.
         </p>
      </sec>
   </body>
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